2013 Publications

See below the list of our 2013 publications.
Publications 2013
  • Abascal F, Corpet A, Gurard-Levin ZA, Juan D, Ochsenbein F, Rico D, Valencia A and Almouzni G (2013) Subfunctionalization via Adaptive Evolution Influenced by Genomic Context: The Case of Histone Chaperones ASF1a and ASF1b. Mol Biol Evol. 30(8):1853-66. doi: 10.1093/molbev/mst086.
  • Adam S, Polo SE and Almouzni G (2013) Transcription recovery after DNA damage requires chromatin priming by the H3.3 histone chaperone HIRA. Cell 155(1):94-106. doi: 10.1016/j.cell.2013.08.029.
  • Andriatsilavo, M, Gervais, L, Fons, C and Bardin AJ (2013) The Drosophila midgut as a model to study adult stem cells. Med Sci. 29(1):75-81. doi: 10.1051/medsci/2013291016.
  • Alt F and Almouzni G (2013) Genome architecture and expression. Curr Opin Genet Dev. 23(2):79-80. doi: 10.1016/j.gde.2013.04.005.
  • Bardet PL, Guirao B, Paoletti C, Serman F, Léopold V, Bosveld F, Goya Y, Mirouse V, Graner F, Bellaïche Y (2013) PTEN Controls Junction Lengthening and Stability during Cell Rearrangement in Epithelial Tissue. Dev Cell. 25(5):534-46. doi: 10.1016/j.devcel.2013.04.020.
  • Bennett G, Papamichos-Chronakis M and Peterson CL (2013) DNA repair choice defines a common pathway for recruitment of chromatin regulators. Nat Commun. 4:2084. doi: 10.1038/ncomms3084.
  • Borde V and de Massy B (2013) Programmed induction of DNA double strand breaks during meiosis: setting up communication between DNA and the chromosome structure. Curr Opin Genet Dev. 23(2):147-55. doi: 10.1016/j.gde.2012.12.002.
  • Carballo JA, Panizza S, Serrentino ME, Johnson AL, Geymonat M, Borde V, Klein F and Cha RS (2013) Budding yeast ATM/ATR control meiotic double-strand break (DSB) levels by down-regulating Rec114, an essential component of the DSB-machinery. PLoS Genet. 9(6):e1003545. doi: 10.1371/journal.pgen.1003545.
  • Casanova M, Pasternak M, El Marjou F, Le Baccon P, Probst AV and Almouzni G (2013) Heterochromatin reorganization during early mouse development requires a single-stranded noncoding transcript. Cell Rep. 4(6):1156-67. doi: 10.1016/j.celrep.2013.08.015.
  • Cavodeassi F, Del Bene F, Fürthauer M, Grabher C, Herzog W, Lehtonen S, Linker C, Mercader N, Mikut R, Norton W, Strähle U, Tiso N (2013) Report of the Second European Zebrafish Principal Investigator Meeting in Karlsruhe, Germany, March 21-24, 2012. Zebrafish 10(1):119-23. doi: 10.1089/zeb.2012.0829. Epub 2013 Mar 26.
  • Chen CJ and Heard E (2013) Small RNAs derived from structural non-coding RNAs. Methods 63(1):76-84. doi: 10.1016/j.ymeth.2013.05.001.
  • Christophorou N, Rubin T and Huynh J-R* (2013) Synaptonemal complex components promote centromere pairing in pre-meiotic germ cells. PLoS Genet. 9(12):e1004012. doi: 10.1371/journal.pgen.1004012.
  • Corbel C, Diabangouaya P, Gendrel AV, Chow JC, Heard E (2013) Unusual chromatin status and organization of the inactive X chromosome in murine trophoblast giant cells. Development 140(4):861-72. doi: 10.1242/dev.087429.
  • Degoutin JL, Milton CC, Yu EF, Tipping M, Bosveld F, Yang L, Bellaiche Y, Veraksa, A and Harvey KF (2013) Riquiqui and Minibrain are regulators of the Hippo pathway downstream of Dachsous. Nat Cell Biol. 15(10):1176-85. doi: 10.1038/ncb2829.
  • de Wit E, Bouwman BA, Zhu Y, Klous P, Splinter E, Verstegen MJ, Krijger PH, Festuccia N, Nora EP, Welling M, Heard E, Geijsen N, Poot RA, Chambers I and de Laat W (2013) The pluripotent genome in three dimensions is shaped around pluripotency factors. Nature 501(7466):227-31. doi: 10.1038/nature12420.
  • Di Donato V, Auer TO, Duroure K and Del Bene F (2013) Characterization of the calcium binding protein family in zebrafish. PLoS One 8(1):e53299. doi: 10.1371/journal.pone.0053299.
  • Duffié R and Bourc’his D (2013) Parental epigenetic asymmetry in mammals. Curr Top Dev Biol. 104:293-328. doi: 10.1016/B978-0-12-416027-9.00009-7.
  • Escamilla-Del-Arenal M, da Rocha ST, Spruijt CG, Masui O, Renaud O, Smits AH, Margueron R, Vermeulen M and Heard E (2013) Cdyl: a new partner of the inactive X chromosome and potential reader of H3K27me3 and H3K9me2. Mol Cell Biol. 33(24):5005-20. doi: 10.1128/MCB.00866-13.
  • Etoc, F, Lisse, D, Bellaiche, Y, Piehler, J, Coppey, M, and Dahan M (2013) Subcellular control Rac-GTPase signalling by magnetogenetic manipulation inside living cells. Nat Nanotechnol. 8(3):193-8. doi: 10.1038/nnano.2013.23.
  • Filipescu D, Szenker E and Almouzni G (2013) Developmental roles of histone H3 variants and their chaperones. Trends Genet. 29(11):630-40. doi: 10.1016/j.tig.2013.06.002.
  • Gebhardt C, Baier H and Del Bene F (2013) Direction selectivity in the visual system of the zebrafish larva. Front Neural Circuits 7:111. doi: 10.3389/fncir.2013.00111.
  • Gendrel AV, Tang YA, Suzuki M, Godwin J, Nesterova TB, Greally JM, Heard E and Brockdorff N (2013) Epigenetic functions of smchd1 repress gene clusters on the inactive X chromosome and on autosomes. Mol Cell Biol. 33(16):3150-65. doi: 10.1128/MCB.00145-13.
  • Giorgetti L, Servant N and Heard E (2013) Changes in the organization of the genome during the mammalian cell cycle. Genome Biol. 14(12):142. doi: 10.1186/gb4147.
  • Guenatri M, Duffié R, Iranzo J, Fauque P and Bourc’his D (2013) Plasticity in Dnmt3L-dependent and -independent modes of de novo methylation in the developing mouse embryo. Development 140(3):562-72. doi: 10.1242/dev.089268.
  • Heard E and Moazed D (2013) Cell nucleus. Curr Opin Cell Biol. 25(3):279-80. doi: 10.1016/
  • Heisenberg C-P and Bellaïche Y (2013) Forces in Tissue Morphogenesis and Patterning. Cell 153(5):948-62. doi: 10.1016/j.cell.2013.05.008.
  • Herszterg S, Leibfried A, Bosveld F, Martin C and Bellaiche Y (2013) Interplay between the dividing cell and its neighbors regulates adherens junction formation during cytokinesis in epithelial tissue. Dev Cell. 24(3):256-70. doi: 10.1016/j.devcel.2012.11.019.
  • Hozé N, Ruault M, Amoruso C, Taddei A and Holcman D (2013) Spatial telomere organization and clustering in yeast Saccharomyces cerevisiae nucleus is generated by a random dynamics of aggregation-dissociation. Mol Biol Cell. 24(11):1791-800, S1-10. doi: 10.1091/mbc.E13-01-0031.
  • Ishihara S, Sugimura K, Cox SJ, Bonnet I, Bellaïche Y and Graner F (2013) Comparative study of non-invasive force and stress inference methods in tissue. Eur Phys J E Soft Matter 36(4):9859. doi: 10.1140/epje/i2013-13045-8.
  • Jagut M, Mihaila-Bodart L, Molla-Herman A, Alin MF, Lepesant JA and Huynh J-R (2013) A mosaic genetic screen for genes involved in the early steps of Drosophila oogenesis. G3 (Bethesda) 3(3):409-25. doi: 10.1534/g3.112.004747.
  • Jauffred B, Llense F, Sommer B, Wang Z, Martin C and Bellaiche Y (2013) Regulation of centrosome movements by Numb and the Collapsin Response Mediator Protein during Drosophila sensory progenitor asymmetric division. Development 140(13):2657-68. doi: 10.1242/dev.087338.
  • Lafkas, D, Rodilla V, Huyghe M, Mourao L, Kiaris H and Fre S (2013) Notch3 marks clonogenic mammary luminal progenitor cells in vivo. J Cell Biol. 203(1):47-56. doi: 10.1083/jcb.201307046.
  • Lucas T, Ferraro T, Roelens B, De Las Heras Chanes J, Walczak AM, Coppey M and Dostatni N (2013) Live imaging of bicoid-dependent transcription in Drosophila embryos. Curr Biol. 23(21):2135-9. doi: 10.1016/j.cub.2013.08.053.
  • MacAlpine DM and Almouzni G (2013) Chromatin and DNA replication. Cold Spring Harb Perspect Biol. 5(8):a010207. doi: 10.1101/cshperspect.a010207.
  • Mathieu J, Cauvin C, Moch C, Radford SJ, Sampaio P, Perdigoto CN, Schweisguth F, Bardin AJ, Sunkel CE, McKim K, Echard A and Huynh J-R (2013) Aurora B and cyclin B have opposite effects on the timing of cytokinesis abscission in Drosophila germ cells and in vertebrate somatic cells. Dev Cell. 26(3):250-65. doi: 10.1016/j.devcel.2013.07.005.
  • Meister P and Taddei A (2013) Building silent compartments at the nuclear periphery: a recurrent theme. Curr Opin Genet Dev. 23(2):96-103. doi: 10.1016/j.gde.2012.12.001.
  • Müller S and Almouzni G (2013) A network of players in H3 histone variant deposition and maintenance at centromeres. Biochim Biophys Acta. 1839(3):241-50. doi: 10.1016/j.bbagrm.2013.11.008.
  • Nora EP, Dekker J and Heard E (2013) Segmental folding of chromosomes: A basis for structural and regulatory chromosomal neighborhoods. Bioessays 35(9):818-28. doi: 10.1002/bies.201300040.
  • Papamichos-Chronakis M and Peterson CL (2013) Chromatin and the genome integrity network. Nat Rev Genet. 14(1):62-75. doi: 10.1038/nrg3345.
  • Peterson CL and Almouzni G (2013) Nucleosome dynamics as modular systems that integrate DNA damage and repair. Cold Spring Harb Perspect Biol. 5(9). pii: a012658. doi: 10.1101/cshperspect.a012658.
  • Perdigoto C.N and Bardin A. J* (2013) Sending the right signal: Notch and stem cells. Biochim. Biophys. Acta 1830(2):2307-22. doi: 10.1016/j.bbagen.2012.08.009.
  • Pchelintsev NA, McBryan T, Rai TS, van Tuyn J, Ray-Gallet D, Almouzni G and Adams PD (2013) Placing the HIRA histone chaperone complex in the chromatin landscape. Cell Rep. 3(4):1012-9. doi: 10.1016/j.celrep.2013.03.026.
  • Pollex T, Piolot T and Heard E (2013) Live-cell imaging combined with immunofluorescence, RNA, or DNA FISH to study the nuclear dynamics and expression of the X-inactivation center. Methods Mol Biol. 1042:13-31. doi: 10.1007/978-1-62703-526-2_2.
  • Rolando M, Sanulli S, Rusniok C, Gomez-Valero L, Bertholet C, Sahr T, Margueron R, and Buchrieser C (2013) Legionella pneumophila Effector RomA Uniquely Modifies Host Chromatin to Repress Gene Expression and Promote Intracellular Bacterial Replication. Cell Host Microbe 13(4):395-405. doi: 10.1016/j.chom.2013.03.004.
  • Schulz EG and Heard E (2013) Role and control of X chromosome dosage in mammalian development. Curr Opin Genet Dev. 23(2):109-15. doi: 10.1016/j.gde.2013.01.008.
  • Sedwick C and Bellaiche Y (2013) Mastering multiscale morphology. J Cell Biol. 203(1):4-5. doi: 10.1083/jcb.2031pi.
  • Seitan VC, Faure AJ, Zhan Y, McCord RP, Lajoie BR, Ing-Simmons E, Lenhard B, Giorgetti L, Heard E, Fisher AG, Flicek P, Dekker J and Merkenschlager M (2013) Cohesin-based chromatin interactions enable regulated gene expression within pre-existing architectural compartments. Genome Res. 23(12):2066-77. doi: 10.1101/gr.161620.113.
  • Serrentino ME, Chaplais E, Sommermeyer V and Borde V (2013) Differential association of the conserved SUMO ligase Zip3 with meiotic double-strand break sites reveals regional variations in the outcome of meiotic recombination. PLoS Genet. 9(4):e1003416. doi: 10.1371/journal.pgen.1003416.
  • Sommermeyer V, Béneut C, Chaplais E, Serrentino ME and Borde V (2013) Spp1, a member of the Set1 Complex, promotes meiotic DSB formation in promoters by tethering histone H3K4 methylation sites to chromosome axes. Mol Cell. 49(1):43-54. doi: 10.1016/j.molcel.2012.11.008.
  • Soria G and Almouzni G (2013) Differential contribution of HP1 proteins to DNA end resection and homology-directed repair. Cell Cycle 12(3):422-9. doi: 10.4161/cc.23215.
  • Szenker E, Boyarchuk E and Almouzni G (2013) Properties and Functions of Histone Variants.  Fundamentals of Chromatin, Springer, pp 375-426. doi: 10.1007/978-1-4614-8624-4_10.
  • Tarabay Y, Kieffer E, Teletin M, Celebi C, Van Montfoort A, Zamudio N, Achour M, El Ramy R, Gazdag E, Tropel P, Mark M, Bourc’his D and Viville S (2013) The mammalian-specific Tex19.1 gene plays an essential role in spermatogenesis and placenta-supported development. Hum Reprod. 28(8):2201-14. doi: 10.1093/humrep/det129.
  • Tropberger P, Pott S, Keller C, Kamieniarz-Gdula K, Caron M, Richter F, Li G.H, Mittler G, Liu ET, Buhler M, Margueron R and Schneider R (2013) Regulation of Transcription through Acetylation of H3K122 on the Lateral Surface of the Histone Octamer. Cell 152(4):859-72. doi: 10.1016/j.cell.2013.01.032.